Package unifeat.gui.featureSelection.filter

Class MGSACOPanel

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Dialog

javax.swing.JDialog

unifeat.gui.ParameterPanel

unifeat.gui.featureSelection.filter.MGSACOPanel

All Implemented Interfaces:

ActionListener, KeyListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, RootPaneContainer, WindowConstants

public class MGSACOPanel
extends ParameterPanel

This java class is used to create and show a panel for the parameter settings of the microarray gene selection based on ant colony optimization (MGSACO) method.

Author:

Shahin Salavati, Sina Tabakhi

See Also:

• ParameterPanel
• MGSACO
• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JDialog

JDialog.AccessibleJDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Dialog.AccessibleAWTDialog, Dialog.ModalExclusionType, Dialog.ModalityType

Nested classes/interfaces inherited from class java.awt.Window

Window.AccessibleAWTWindow, Window.Type

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields inherited from class unifeat.gui.ParameterPanel

btn_more, btn_ok, lbl_about, lbl_title, moreOptionDescription, panel_about

Fields inherited from class javax.swing.JDialog

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog

DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors

Constructor	Description
MGSACOPanel()	Creates new form MGSACOPanel.

Method Summary

Modifier and Type	Method	Description
protected void	btn_okActionPerformed(ActionEvent e)	This method sets an action for the btn_ok button.
double	getBeta()	This method returns the beta.
double	getEvRate()	This method returns the evaporation rate.
double	getInitPheromone()	This method returns the initial pheromone value.
int	getNumAnts()	This method returns the number of ants value.
int	getNumIteration()	This method returns the number of iterations value.
double	getQ0()	This method returns the q0.
void	keyReleased(KeyEvent e)	The listener method for receiving keyboard events (keystrokes).
void	setBeta(double beta)	This method sets the beta value.
void	setDefaultValue()	Sets the default values of the MGSACO parameters
void	setEvRate(double evRate)	This method sets the evaporation rate value.
void	setInitPheromone(double initPheromone)	This method sets the initial pheromone value.
void	setNumAnts(int numAnts)	This method sets the number of ants value.
void	setNumIteration(int numIteration)	This method sets the number of iterations value.
void	setQ0(double q0)	This method sets the q0 value.
void	setUserValue(double initPheromoneValue, int numIterations, int numberAnt, double evaporationRate, double betaParameter, double q0_Parameter)	Sets the last values of the MGSACO parameters entered by user

Methods inherited from class unifeat.gui.ParameterPanel

actionPerformed, btn_moreActionPerformed, getMoreOptionDescription, keyPressed, keyTyped, setMethodDescription, setMethodDescriptionPosition, setMethodTitle, setMethodTitlePosition, setMoreButtonPosition, setMoreOptionDescription, setOkButtonPosition, setPanelSize, setPanelTitle

Methods inherited from class javax.swing.JDialog

addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog

addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, setVisible, show, toBack

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

MGSACOPanel

public MGSACOPanel()

Creates new form MGSACOPanel. This method is called from within the constructor to initialize the form.

Method Details

keyReleased

public void keyReleased(KeyEvent e)

The listener method for receiving keyboard events (keystrokes). Invoked when a key has been released.

Specified by:

keyReleased in interface KeyListener

Specified by:

keyReleased in class ParameterPanel

Parameters:

e - an action event

btn_okActionPerformed

protected void btn_okActionPerformed(ActionEvent e)

This method sets an action for the btn_ok button.

Overrides:

btn_okActionPerformed in class ParameterPanel

Parameters:

e - an action event

getInitPheromone

public double getInitPheromone()

This method returns the initial pheromone value.

Returns:

the initPheromone parameter

setInitPheromone

public void setInitPheromone(double initPheromone)

This method sets the initial pheromone value.

Parameters:

initPheromone - the initial pheromone value

getNumIteration

public int getNumIteration()

This method returns the number of iterations value.

Returns:

the numIteration parameter

setNumIteration

public void setNumIteration(int numIteration)

This method sets the number of iterations value.

Parameters:

numIteration - the number of iterations value

getNumAnts

public int getNumAnts()

This method returns the number of ants value.

Returns:

the numAnts parameter

setNumAnts

public void setNumAnts(int numAnts)

This method sets the number of ants value.

Parameters:

numAnts - the number of ants value

getEvRate

public double getEvRate()

This method returns the evaporation rate.

Returns:

the evaporation rate parameter

setEvRate

public void setEvRate(double evRate)

This method sets the evaporation rate value.

Parameters:

evRate - the evaporation rate value

getBeta

public double getBeta()

This method returns the beta.

Returns:

the beta parameter

setBeta

public void setBeta(double beta)

This method sets the beta value.

Parameters:

beta - the beta value

getQ0

public double getQ0()

This method returns the q0.

Returns:

the q0 parameter

setQ0

public void setQ0(double q0)

This method sets the q0 value.

Parameters:

q0 - the q0 value

setDefaultValue

public void setDefaultValue()

Sets the default values of the MGSACO parameters

setUserValue

public void setUserValue(double initPheromoneValue,
 int numIterations,
 int numberAnt,
 double evaporationRate,
 double betaParameter,
 double q0_Parameter)

Sets the last values of the MGSACO parameters entered by user

Parameters:

initPheromoneValue - the initial value of the pheromone

numIterations - the maximum number of iteration

numberAnt - the number of ants

evaporationRate - the evaporation rate of the pheromone

betaParameter - the beta parameter in the state transition rule

q0_Parameter - the q0 parameter in the state transition rule